NanoComp report

Summary statistics

feature
General summary H9_2_4 H9_3_4 H9_4_4 HEYA8_1_4 HEYA8_2_4 HEYA8_3_4
Mean read length 1,204.2 1,193.0 1,207.6 1,134.2 1,120.8 1,133.2
Mean read quality 11.7 11.7 11.7 11.7 11.7 11.6
Median read length 947.0 938.0 950.0 899.0 888.0 894.0
Median read quality 12.3 12.3 12.3 12.3 12.3 12.3
Number of reads 1,585,284.0 1,671,014.0 1,498,136.0 1,755,040.0 1,725,141.0 1,566,988.0
Read length N50 1,364.0 1,337.0 1,370.0 1,246.0 1,219.0 1,242.0
STDEV read length 757.2 744.1 758.0 684.4 676.5 695.3
Total bases 1,909,030,620.0 1,993,457,234.0 1,809,079,717.0 1,990,492,983.0 1,933,576,845.0 1,775,698,192.0
Number, percentage and megabases of reads above quality cutoffs
>Q10 1585284 (100.0%) 1909.0Mb 1671014 (100.0%) 1993.5Mb 1498136 (100.0%) 1809.1Mb 1755040 (100.0%) 1990.5Mb 1725141 (100.0%) 1933.6Mb 1566987 (100.0%) 1775.7Mb
>Q15 58031 (3.7%) 98.8Mb 56814 (3.4%) 97.9Mb 52416 (3.5%) 90.5Mb 55952 (3.2%) 91.2Mb 58025 (3.4%) 91.9Mb 47663 (3.0%) 79.3Mb
>Q20 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 3 (0.0%) 0.0Mb 1 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb
>Q25 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb
>Q30 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 19.8 (752) 19.7 (599) 19.6 (633) 21.4 (513) 20.2 (575) 19.5 (562)
2 19.1 (558) 19.1 (850) 19.1 (695) 20.5 (975) 19.8 (1350) 19.4 (510)
3 19.0 (765) 18.8 (3756) 19.1 (5211) 20.2 (544) 19.6 (782) 18.9 (854)
4 18.9 (2055) 18.8 (561) 19.1 (1315) 19.1 (2038) 19.2 (611) 18.7 (1004)
5 18.7 (710) 18.8 (504) 19.0 (518) 19.1 (631) 18.9 (1610) 18.7 (3870)
Top 5 longest reads and their mean basecall quality score
1 12885 (13.0) 12692 (14.1) 14412 (12.6) 13448 (11.9) 14254 (12.1) 13541 (13.6)
2 12561 (13.3) 12337 (13.0) 12264 (12.2) 11633 (10.4) 12702 (11.6) 11263 (12.1)
3 12410 (15.4) 11524 (13.2) 12235 (11.6) 11275 (14.8) 12076 (12.8) 11017 (15.1)
4 11911 (14.4) 11291 (13.6) 12183 (12.4) 11145 (10.3) 11870 (12.2) 10941 (13.4)
5 11184 (14.4) 11195 (13.0) 11761 (15.0) 10940 (14.6) 11590 (12.8) 10689 (12.5)

Plots

Comparing number of reads

Comparing throughput in bases

Comparing read length N50

Comparing read length

Comparing log-transformed read length

Comparing average base call quality score

Histogram of read lengths

Normalized histogram of read lengths

Weighted histogram of read lengths

Histogram of log transformed read lengths

Normalized histogram of log transformed read lengths

Weighted histogram of log transformed read lengths